ReMark
Restriction endonuclease site likelihood-ratio test in Markov Chain sequence models.
ReMark is a program for analysing restriction endunuclease recognition site attribution to sequence class specified by first order Markov Chain (dinucleotide frequency) model.
Program calculates score as likelihood ratio test value
In case of ambiguous site the probablity (likelihood) is calculated as average of produced unambiguous sites
Input data: Markov Chain (dinucleotide frequency) sequence models
Output: Restriction endonucleases (ReBase) recognition site list sorted by score.
Рекламно-техническое описание программы ReMark (на русском языке)